HL_7OSM_058

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7OSM|1|25S|C|959, 7OSM|1|25S|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_058 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0608

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7OSM|1|25S|C|958
7OSM|1|25S|C|959
7OSM|1|25S|U|960
7OSM|1|25S|C|961
7OSM|1|25S|A|962
7OSM|1|25S|G|963

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL29

60S ribosomal protein L29

Chain eL42

BJ4_G0001880.mRNA.1.CDS.1

Chain uL15

60S ribosomal protein L28