3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUUAAUUG
Length
8 nucleotides
Bulged bases
7OSM|1|25S|U|1081
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OSM_060 not in the Motif Atlas
Homologous match to HL_8C3A_024
Geometric discrepancy: 0.1245
The information below is about HL_8C3A_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

7OSM|1|25S|C|1076
7OSM|1|25S|U|1077
7OSM|1|25S|U|1078
7OSM|1|25S|A|1079
7OSM|1|25S|A|1080
7OSM|1|25S|U|1081
7OSM|1|25S|U|1082
7OSM|1|25S|G|1083

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain eL21
BJ4_G0003770.mRNA.1.CDS.1
Chain eL29
60S ribosomal protein L29
Chain uL18
60S ribosomal protein L5

Coloring options:


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