HL_7OSM_062

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_062 not in the Motif Atlas

Homologous match to HL_8C3A_026

Geometric discrepancy: 0.0871

The information below is about HL_8C3A_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OSM|1|25S|G|1148
7OSM|1|25S|G|1149
7OSM|1|25S|A|1150
7OSM|1|25S|U|1151
7OSM|1|25S|G|1152
7OSM|1|25S|A|1153
7OSM|1|25S|A|1154
7OSM|1|25S|C|1155

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain eL32

HN1_G0013350.mRNA.1.CDS.1

Chain eL33

BJ4_G0025510.mRNA.1.CDS.1

Chain uL30

60S ribosomal protein L7-A