HL_7OSM_063

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7OSM|1|25S|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_063 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2714

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7OSM|1|25S|C|1239
7OSM|1|25S|A|1240
7OSM|1|25S|U|1241
7OSM|1|25S|G|1242
7OSM|1|25S|G|1243
7OSM|1|25S|A|1244
7OSM|1|25S|A|1245
7OSM|1|25S|G|1246
7OSM|1|25S|U|1247
7OSM|1|25S|C|1248
7OSM|1|25S|G|1249

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eEF2

Elongation factor 2

Chain uL11

60S ribosomal protein L12-B