HL_7OSM_086

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7OSM|1|25S|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_086 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.0894

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7OSM|1|25S|U|2292
7OSM|1|25S|C|2293
7OSM|1|25S|U|2294
7OSM|1|25S|A|2295
7OSM|1|25S|A|2296
7OSM|1|25S|U|2297
7OSM|1|25S|U|2298
7OSM|1|25S|A|2299
7OSM|1|25S|G|2300

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain 18S

Small subunit ribosomal RNA; SSU rRNA

Chain uL14

60S ribosomal protein L23-B