HL_7OSM_092

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

7OSM|1|25S|A|2637, 7OSM|1|25S|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_092 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0893

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7OSM|1|25S|U|2633
7OSM|1|25S|U|2634
7OSM|1|25S|A|2635
7OSM|1|25S|A|2636
7OSM|1|25S|A|2637
7OSM|1|25S|C|2638
7OSM|1|25S|G|2639
7OSM|1|25S|A|2640
7OSM|1|25S|U|2641
7OSM|1|25S|A|2642
7OSM|1|25S|A|2643
7OSM|1|25S|C|2644
7OSM|1|25S|G|2645

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL21

BJ4_G0003770.mRNA.1.CDS.1

Chain eL29

60S ribosomal protein L29

Chain uL16

60S ribosomal protein L10