HL_7OSM_095

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUCAGUGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_095 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.1385

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7OSM|1|25S|U|2724
7OSM|1|25S|U|2725
7OSM|1|25S|C|2726
7OSM|1|25S|A|2727
7OSM|1|25S|G|2728
7OSM|1|25S|U|2729
7OSM|1|25S|G|2730
7OSM|1|25S|U|2731
7OSM|1|25S|G|2732

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL18

BJ4_G0033900.mRNA.1.CDS.1

Chain eL21

BJ4_G0003770.mRNA.1.CDS.1

Chain eL42

BJ4_G0001880.mRNA.1.CDS.1

Chain uL15

60S ribosomal protein L28