HL_7OSM_098

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

7OSM|1|25S|U|2842, 7OSM|1|25S|U|2843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_098 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1904

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OSM|1|25S|C|2840
7OSM|1|25S|G|2841
7OSM|1|25S|U|2842
7OSM|1|25S|U|2843
7OSM|1|25S|C|2844
7OSM|1|25S|A|2845
7OSM|1|25S|U|2846
7OSM|1|25S|A|2847
7OSM|1|25S|G|2848

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eEF2

Elongation factor 2

Chain eL40

Ubiquitin

Chain uL16

60S ribosomal protein L10