3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CACAUUG
Length
7 nucleotides
Bulged bases
7OSM|1|58S|A|111, 7OSM|1|58S|U|113
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OSM_111 not in the Motif Atlas
Homologous match to HL_5TBW_075
Geometric discrepancy: 0.1729
The information below is about HL_5TBW_075
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_22523.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
13

Unit IDs

7OSM|1|58S|C|108
7OSM|1|58S|A|109
7OSM|1|58S|C|110
7OSM|1|58S|A|111
7OSM|1|58S|U|112
7OSM|1|58S|U|113
7OSM|1|58S|G|114

Current chains

Chain 58S
5.8S rRNA

Nearby chains

Chain 25S
Large subunit ribosomal RNA; LSU rRNA
Chain eL37
Ribosomal protein L37
Chain eL39
60S ribosomal protein L39
Chain uL23
60S ribosomal protein L25

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3739 s