HL_7OW7_007

3D structure

PDB id

7OW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EIF6-bound large subunit of the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

7OW7|1|A|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OW7_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.1556

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7OW7|1|A|G|230
7OW7|1|A|U|231
7OW7|1|A|G|232
7OW7|1|A|U|233
7OW7|1|A|G|234
7OW7|1|A|A|235
7OW7|1|A|G|236
7OW7|1|A|G|237
7OW7|1|A|C|238

Current chains

Chain A

28S rRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain F

60S ribosomal protein L4

Chain S

60S ribosomal protein L26