HL_7OW7_069
3D structure
- PDB id
- 7OW7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EIF6-bound large subunit of the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAGCUAGC(PSU)G
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OW7_069 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.3138
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
7OW7|1|C|C|47
7OW7|1|C|A|48
7OW7|1|C|G|49
7OW7|1|C|C|50
7OW7|1|C|U|51
7OW7|1|C|A|52
7OW7|1|C|G|53
7OW7|1|C|C|54
7OW7|1|C|PSU|55
7OW7|1|C|G|56
Current chains
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain R
- 60S ribosomal protein L23a
- Chain b
- 60S ribosomal protein L35
- Chain d
- 60S ribosomal protein L37
- Chain f
- 60S ribosomal protein L39
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