HL_7OYD_011

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_011 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3339

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7OYD|1|5|U|392
7OYD|1|5|U|393
7OYD|1|5|G|394
7OYD|1|5|A|395
7OYD|1|5|A|396
7OYD|1|5|G|397
7OYD|1|5|A2M|398
7OYD|1|5|G|399

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17