HL_7OYD_013

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCGAGACCCGU

Length

11 nucleotides

Bulged bases

7OYD|1|5|C|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_013 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3342

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7OYD|1|5|G|964
7OYD|1|5|C|965
7OYD|1|5|G|966
7OYD|1|5|A|967
7OYD|1|5|G|968
7OYD|1|5|A|969
7OYD|1|5|C|970
7OYD|1|5|C|971
7OYD|1|5|C|972
7OYD|1|5|G|973
7OYD|1|5|U|974

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain F

uL30