HL_7OYD_024

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

7OYD|1|5|C|1680, 7OYD|1|5|C|1682, 7OYD|1|5|A|1683

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_024 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2221

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7OYD|1|5|C|1679
7OYD|1|5|C|1680
7OYD|1|5|PSU|1681
7OYD|1|5|C|1682
7OYD|1|5|A|1683
7OYD|1|5|G|1684

Current chains

Chain 5

28S rRNA

Nearby chains

Chain a

uL15

Chain b

60S ribosomal protein L29

Chain o

RPL36A