HL_7OYD_029

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCAUGGAAGUCGG

Length

13 nucleotides

Bulged bases

7OYD|1|5|A|1988, 7OYD|1|5|C|1991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_029 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3658

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

7OYD|1|5|C|1981
7OYD|1|5|C|1982
7OYD|1|5|A|1983
7OYD|1|5|U|1984
7OYD|1|5|G|1985
7OYD|1|5|G|1986
7OYD|1|5|A|1987
7OYD|1|5|A|1988
7OYD|1|5|G|1989
7OYD|1|5|U|1990
7OYD|1|5|C|1991
7OYD|1|5|G|1992
7OYD|1|5|G|1993

Current chains

Chain 5

28S rRNA

Nearby chains

Chain v

EEF2