HL_7OYD_066

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_066 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1555

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7OYD|1|5|U|4650
7OYD|1|5|G|4651
7OYD|1|5|A|4652
7OYD|1|5|G|4653
7OYD|1|5|G|4654
7OYD|1|5|A|4655

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

RPL22

Chain d

eL31