HL_7OYD_080

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_080 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.1944

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7OYD|1|9|U|416
7OYD|1|9|C|417
7OYD|1|9|A|418
7OYD|1|9|G|419
7OYD|1|9|G|420
7OYD|1|9|G|421

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

RPS2

Chain JJ

Ribosomal protein S9 (Predicted)

Chain LL

40S ribosomal protein S11

Chain WW

Ribosomal protein S15a

Chain XX

RPS23