HL_7OYD_081

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

7OYD|1|9|C|450, 7OYD|1|9|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_081 not in the Motif Atlas

Geometric match to HL_4V88_195

Geometric discrepancy: 0.1173

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7OYD|1|9|C|441
7OYD|1|9|C|442
7OYD|1|9|U|443
7OYD|1|9|G|444
7OYD|1|9|A|445
7OYD|1|9|G|446
7OYD|1|9|A|447
7OYD|1|9|A|448
7OYD|1|9|A|449
7OYD|1|9|C|450
7OYD|1|9|G|451
7OYD|1|9|G|452

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8