HL_7OYD_089
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_089 not in the Motif Atlas
- Homologous match to HL_8C3A_210
- Geometric discrepancy: 0.5437
- The information below is about HL_8C3A_210
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08554.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|9|U|885
7OYD|1|9|A|886
7OYD|1|9|U|887
7OYD|1|9|U|888
7OYD|1|9|U|889
7OYD|1|9|U|890
7OYD|1|9|G|891
7OYD|1|9|U|892
7OYD|1|9|U|893
7OYD|1|9|G|894
7OYD|1|9|G|895
7OYD|1|9|U|896
7OYD|1|9|U|897
7OYD|1|9|U|898
7OYD|1|9|U|899
7OYD|1|9|C|900
7OYD|1|9|G|901
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain GG
- 40S ribosomal protein S6
Coloring options: