HL_7OYD_096
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 7OYD|1|9|A|1253
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_096 not in the Motif Atlas
- Homologous match to HL_8C3A_217
- Geometric discrepancy: 0.1029
- The information below is about HL_8C3A_217
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7OYD|1|9|G|1245
7OYD|1|9|A|1246
7OYD|1|9|C|1247
7OYD|1|9|B8N|1248
7OYD|1|9|C|1249
7OYD|1|9|A|1250
7OYD|1|9|A|1251
7OYD|1|9|C|1252
7OYD|1|9|A|1253
7OYD|1|9|C|1254
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain Dd
- uS14
- Chain QQ
- Ribosomal protein S16
- Chain UU
- 40S ribosomal protein uS10
- Chain w
- SERPINE1 mRNA binding protein 1
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