HL_7OYD_099

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7OYD|1|9|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_099 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.1058

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

7OYD|1|9|G|1366
7OYD|1|9|U|1367
7OYD|1|9|U|1368
7OYD|1|9|A|1369
7OYD|1|9|A|1370
7OYD|1|9|U|1371
7OYD|1|9|U|1372
7OYD|1|9|C|1373

Current chains

Chain 9

18S rRNA

Nearby chains

Chain RR

40S ribosomal protein eS17