HL_7OYD_111

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

7OYD|1|5|C|1329

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_111 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0837

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7OYD|1|5|U|1321
7OYD|1|5|C|1322
7OYD|1|5|U|1323
7OYD|1|5|U|1324
7OYD|1|5|G|1325
7OYD|1|5|1MA|1326
7OYD|1|5|A|1327
7OYD|1|5|A|1328
7OYD|1|5|C|1329
7OYD|1|5|A2M|1330

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain a

uL15

Chain e

eL32