HL_7P48_082

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAGUAACUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P48_082 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3213

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7P48|1|a|A|470
7P48|1|a|A|471
7P48|1|a|G|472
7P48|1|a|U|473
7P48|1|a|A|474
7P48|1|a|A|475
7P48|1|a|C|476
7P48|1|a|U|477
7P48|1|a|G|478
7P48|1|a|U|479

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16