HL_7P48_101

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCACGUGAAAU

Length

11 nucleotides

Bulged bases

7P48|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P48_101 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1541

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7P48|1|A|G|428
7P48|1|A|C|429
7P48|1|A|A|430
7P48|1|A|C|431
7P48|1|A|G|432
7P48|1|A|U|433
7P48|1|A|G|434
7P48|1|A|A|435
7P48|1|A|A|436
7P48|1|A|A|437
7P48|1|A|U|438

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L28