HL_7P7R_009

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGGAAAA

Length

8 nucleotides

Bulged bases

7P7R|1|A|A|347

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P7R_009 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.1057

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

7P7R|1|A|U|341
7P7R|1|A|U|342
7P7R|1|A|G|343
7P7R|1|A|G|344
7P7R|1|A|A|345
7P7R|1|A|A|346
7P7R|1|A|A|347
7P7R|1|A|A|348

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L24