HL_7P7R_072

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUCAGGUAG

Length

11 nucleotides

Bulged bases

7P7R|1|D|G|19, 7P7R|1|D|G|20, 7P7R|1|D|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P7R_072 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.1305

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7P7R|1|D|C|13
7P7R|1|D|A|14
7P7R|1|D|G|15
7P7R|1|D|U|16
7P7R|1|D|C|17
7P7R|1|D|A|18
7P7R|1|D|G|19
7P7R|1|D|G|20
7P7R|1|D|U|21
7P7R|1|D|A|22
7P7R|1|D|G|23

Current chains

Chain D

tRNA-fMet

Nearby chains

Chain 0

ARE-ABC-F family resistance factor PoxtA

Chain A

Large subunit ribosomal RNA; LSU rRNA