HL_7P7U_011

3D structure

PDB id

7P7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome with P-tRNA, state IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

7P7U|1|A|G|365, 7P7U|1|A|A|366, 7P7U|1|A|A|367

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P7U_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0808

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7P7U|1|A|G|363
7P7U|1|A|U|364
7P7U|1|A|G|365
7P7U|1|A|A|366
7P7U|1|A|A|367
7P7U|1|A|A|368
7P7U|1|A|G|369
7P7U|1|A|C|370
7P7U|1|A|C|371

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain X

50S ribosomal protein L24