HL_7PHC_010

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UUGGAAAG

Length

8 nucleotides

Bulged bases

7PHC|1|3|A|345

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PHC_010 not in the Motif Atlas

Geometric match to HL_4WF9_010

Geometric discrepancy: 0.2995

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

7PHC|1|3|U|339
7PHC|1|3|U|340
7PHC|1|3|G|341
7PHC|1|3|G|342
7PHC|1|3|A|343
7PHC|1|3|A|344
7PHC|1|3|A|345
7PHC|1|3|G|346

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain t

50S ribosomal protein L24