HL_7PHC_018

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

AGGAGAU

Length

7 nucleotides

Bulged bases

7PHC|1|3|A|649

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PHC_018 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.2773

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7PHC|1|3|A|646
7PHC|1|3|G|647
7PHC|1|3|G|648
7PHC|1|3|A|649
7PHC|1|3|G|650
7PHC|1|3|A|651
7PHC|1|3|U|652

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4