HL_7PIA_032
3D structure
- PDB id
- 7PIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.6 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 7PIA|1|3|A|1315, 7PIA|1|3|U|1316
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PIA_032 not in the Motif Atlas
- Geometric match to HL_4V9F_010
- Geometric discrepancy: 0.3089
- The information below is about HL_4V9F_010
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_13999.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
7PIA|1|3|G|1309
7PIA|1|3|U|1310
7PIA|1|3|G|1311
7PIA|1|3|A|1312
7PIA|1|3|G|1313
7PIA|1|3|A|1314
7PIA|1|3|A|1315
7PIA|1|3|U|1316
7PIA|1|3|C|1317
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain m
- 50S ribosomal protein L17
- Chain r
- 50S ribosomal protein L22
- Chain y
- 50S ribosomal protein L32
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