HL_7PIA_041

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

AGAGGAU

Length

7 nucleotides

Bulged bases

7PIA|1|3|G|1668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_041 not in the Motif Atlas

Geometric match to HL_6ASO_001

Geometric discrepancy: 0.299

The information below is about HL_6ASO_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7PIA|1|3|A|1664
7PIA|1|3|G|1665
7PIA|1|3|A|1666
7PIA|1|3|G|1667
7PIA|1|3|G|1668
7PIA|1|3|A|1669
7PIA|1|3|U|1670

Current chains

Chain 3

23S ribosomal RNA

Nearby chains