HL_7PIA_065

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7PIA|1|3|A|2758, 7PIA|1|3|C|2763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.5235

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7PIA|1|3|C|2753
7PIA|1|3|U|2754
7PIA|1|3|G|2755
7PIA|1|3|A|2756
7PIA|1|3|A|2757
7PIA|1|3|A|2758
7PIA|1|3|G|2759
7PIA|1|3|C|2760
7PIA|1|3|A|2761
7PIA|1|3|U|2762
7PIA|1|3|C|2763
7PIA|1|3|U|2764
7PIA|1|3|A|2765
7PIA|1|3|A|2766
7PIA|1|3|G|2767

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain e

50S ribosomal protein L6