HL_7PIA_093

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7PIA|1|5|G|1085

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_093 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.5548

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

7PIA|1|5|G|1080
7PIA|1|5|U|1081
7PIA|1|5|U|1082
7PIA|1|5|A|1083
7PIA|1|5|A|1084
7PIA|1|5|G|1085
7PIA|1|5|U|1086
7PIA|1|5|C|1087

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain A

30S ribosomal protein S2

Chain F

30S ribosomal protein S7