HL_7PIA_097

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CUGCAAUUCG

Length

10 nucleotides

Bulged bases

7PIA|1|5|C|1296

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_097 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.4079

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7PIA|1|5|C|1288
7PIA|1|5|U|1289
7PIA|1|5|G|1290
7PIA|1|5|C|1291
7PIA|1|5|A|1292
7PIA|1|5|A|1293
7PIA|1|5|U|1294
7PIA|1|5|U|1295
7PIA|1|5|C|1296
7PIA|1|5|G|1297

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S13

Chain M

30S ribosomal protein S14 type Z

Chain R

30S ribosomal protein S19