HL_7PIA_101

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

7PIA|1|7|G|19, 7PIA|1|7|G|20, 7PIA|1|7|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_101 not in the Motif Atlas

Homologous match to HL_5J8B_105

Geometric discrepancy: 0.494

The information below is about HL_5J8B_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PIA|1|7|C|14
7PIA|1|7|A|15
7PIA|1|7|G|16
7PIA|1|7|U|17
7PIA|1|7|C|18
7PIA|1|7|G|19
7PIA|1|7|G|20
7PIA|1|7|U|21
7PIA|1|7|A|22
7PIA|1|7|G|23

Current chains

Chain 7

tRNA-Phe

Nearby chains

Chain 3

Large subunit ribosomal RNA; LSU rRNA

Chain d

50S ribosomal protein L5