HL_7PIA_121

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7PIA|1|5|U|257, 7PIA|1|5|A|258, 7PIA|1|5|G|262

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_121 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.4532

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7PIA|1|5|G|255
7PIA|1|5|G|256
7PIA|1|5|U|257
7PIA|1|5|A|258
7PIA|1|5|A|259
7PIA|1|5|C|260
7PIA|1|5|G|261
7PIA|1|5|G|262
7PIA|1|5|C|263

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S17

Chain S

30S ribosomal protein S20