HL_7PIB_010

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUGGAAAGC

Length

10 nucleotides

Bulged bases

7PIB|1|3|A|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_010 not in the Motif Atlas

Geometric match to HL_8CRE_223

Geometric discrepancy: 0.2443

The information below is about HL_8CRE_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

7PIB|1|3|G|338
7PIB|1|3|U|339
7PIB|1|3|U|340
7PIB|1|3|G|341
7PIB|1|3|G|342
7PIB|1|3|A|343
7PIB|1|3|A|344
7PIB|1|3|A|345
7PIB|1|3|G|346
7PIB|1|3|C|347

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L24