HL_7PIB_013

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGACCAUU

Length

8 nucleotides

Bulged bases

7PIB|1|3|G|447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_013 not in the Motif Atlas

Geometric match to HL_4WF9_014

Geometric discrepancy: 0.1253

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7PIB|1|3|A|446
7PIB|1|3|G|447
7PIB|1|3|A|448
7PIB|1|3|C|449
7PIB|1|3|C|450
7PIB|1|3|A|451
7PIB|1|3|U|452
7PIB|1|3|U|453

Current chains

Chain 3

23S ribosomal RNA

Nearby chains