HL_7PIB_015

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_015 not in the Motif Atlas

Geometric match to HL_5J7L_027

Geometric discrepancy: 0.3175

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7PIB|1|3|A|523
7PIB|1|3|G|524
7PIB|1|3|A|525
7PIB|1|3|G|526
7PIB|1|3|A|527
7PIB|1|3|U|528

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain r

50S ribosomal protein L22

Chain t

50S ribosomal protein L24