HL_7PIB_023

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUGAAAUUC

Length

9 nucleotides

Bulged bases

7PIB|1|3|A|816, 7PIB|1|3|A|817, 7PIB|1|3|U|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_023 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.2972

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

7PIB|1|3|G|813
7PIB|1|3|U|814
7PIB|1|3|G|815
7PIB|1|3|A|816
7PIB|1|3|A|817
7PIB|1|3|A|818
7PIB|1|3|U|819
7PIB|1|3|U|820
7PIB|1|3|C|821

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2