HL_7PIB_094

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7PIB|1|5|G|1085

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_094 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.3942

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

7PIB|1|5|G|1080
7PIB|1|5|U|1081
7PIB|1|5|U|1082
7PIB|1|5|A|1083
7PIB|1|5|A|1084
7PIB|1|5|G|1085
7PIB|1|5|U|1086
7PIB|1|5|C|1087

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain A

30S ribosomal protein S2

Chain F

30S ribosomal protein S7