HL_7PIB_102

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

7PIB|1|7|U|17, 7PIB|1|7|C|18, 7PIB|1|7|G|19, 7PIB|1|7|G|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIB_102 not in the Motif Atlas

Homologous match to HL_6ORD_035

Geometric discrepancy: 0.5909

The information below is about HL_6ORD_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07951.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7PIB|1|7|C|14
7PIB|1|7|A|15
7PIB|1|7|G|16
7PIB|1|7|U|17
7PIB|1|7|C|18
7PIB|1|7|G|19
7PIB|1|7|G|20
7PIB|1|7|U|21
7PIB|1|7|A|22
7PIB|1|7|G|23

Current chains

Chain 7

tRNA-Phe

Nearby chains

Chain 3

Large subunit ribosomal RNA; LSU rRNA

Chain d

50S ribosomal protein L5