HL_7PIR_010

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUUGGAAAGC

Length

10 nucleotides

Bulged bases

7PIR|1|3|A|345

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_010 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3732

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

7PIR|1|3|G|338
7PIR|1|3|U|339
7PIR|1|3|U|340
7PIR|1|3|G|341
7PIR|1|3|G|342
7PIR|1|3|A|343
7PIR|1|3|A|344
7PIR|1|3|A|345
7PIR|1|3|G|346
7PIR|1|3|C|347

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L24