HL_7PIR_020

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UUUAAAAGA

Length

9 nucleotides

Bulged bases

7PIR|1|3|A|681

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_020 not in the Motif Atlas

Geometric match to HL_4WF9_039

Geometric discrepancy: 0.3152

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7PIR|1|3|U|676
7PIR|1|3|U|677
7PIR|1|3|U|678
7PIR|1|3|A|679
7PIR|1|3|A|680
7PIR|1|3|A|681
7PIR|1|3|A|682
7PIR|1|3|G|683
7PIR|1|3|A|684

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L35

Chain k

50S ribosomal protein L15

Chain z

50S ribosomal protein L33 1