HL_7PIR_021

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AGUAACAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_021 not in the Motif Atlas

Geometric match to HL_3HHN_010

Geometric discrepancy: 0.282

The information below is about HL_3HHN_010

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7PIR|1|3|A|747
7PIR|1|3|G|748
7PIR|1|3|U|749
7PIR|1|3|A|750
7PIR|1|3|A|751
7PIR|1|3|C|752
7PIR|1|3|A|753
7PIR|1|3|U|754

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S15