HL_7PIR_026

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

7PIR|1|3|U|994, 7PIR|1|3|G|997

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_026 not in the Motif Atlas

Geometric match to HL_4WF9_027

Geometric discrepancy: 0.3213

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7PIR|1|3|G|991
7PIR|1|3|G|992
7PIR|1|3|A|993
7PIR|1|3|U|994
7PIR|1|3|A|995
7PIR|1|3|A|996
7PIR|1|3|G|997
7PIR|1|3|C|998

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L16