HL_7PIR_049

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGUAAAUUC

Length

9 nucleotides

Bulged bases

7PIR|1|3|U|1962

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_049 not in the Motif Atlas

Geometric match to HL_5TBW_050

Geometric discrepancy: 0.3119

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7PIR|1|3|G|1956
7PIR|1|3|G|1957
7PIR|1|3|U|1958
7PIR|1|3|A|1959
7PIR|1|3|A|1960
7PIR|1|3|A|1961
7PIR|1|3|U|1962
7PIR|1|3|U|1963
7PIR|1|3|C|1964

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA

Chain j

50S ribosomal protein L14