HL_7PIR_083

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GCUUAAC

Length

7 nucleotides

Bulged bases

7PIR|1|5|U|617

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIR_083 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.5463

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

7PIR|1|5|G|615
7PIR|1|5|C|616
7PIR|1|5|U|617
7PIR|1|5|U|618
7PIR|1|5|A|619
7PIR|1|5|A|620
7PIR|1|5|C|621

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S4

Chain O

30S ribosomal protein S16