HL_7PIR_097
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- CUGCAAUUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PIR_097 not in the Motif Atlas
- Geometric match to HL_8VT5_003
- Geometric discrepancy: 0.3738
- The information below is about HL_8VT5_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_01609.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
7PIR|1|5|C|1288
7PIR|1|5|U|1289
7PIR|1|5|G|1290
7PIR|1|5|C|1291
7PIR|1|5|A|1292
7PIR|1|5|A|1293
7PIR|1|5|U|1294
7PIR|1|5|U|1295
7PIR|1|5|C|1296
7PIR|1|5|G|1297
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S13
- Chain M
- 30S ribosomal protein S14 type Z
- Chain R
- 30S ribosomal protein S19
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