HL_7PJX_011

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

7PJX|1|A|G|386, 7PJX|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJX_011 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0939

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7PJX|1|A|A|382
7PJX|1|A|C|383
7PJX|1|A|A|384
7PJX|1|A|C|385
7PJX|1|A|G|386
7PJX|1|A|U|387
7PJX|1|A|G|388
7PJX|1|A|G|389
7PJX|1|A|U|390
7PJX|1|A|A|391
7PJX|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28

Chain v

Transfer RNA; tRNA